Software
This is an overview of software I have developed or contributed to. For a full list, see github.com/milanmlft.
As (co-)maintainer
- spatialDE: Bioconductor package that wraps the Python SpatialDE library to find spatially variable genes from spatial transcriptomics data
- TargetDecoy: Bioconductor package to evaluate the Target Decoy Approach for proteomics data, including a Shiny gadget for interactive exploration
- Rmd-website: GitHub template repository to generate automated RMarkdown-based websites used to teach courses for the statOmics group at Ghent University
- HDDAData: R Data package to provide easy access to data sets used in the High Dimensional Data Analysis course at Ghent University
As contributor
- msqrob2: robust statistical inference for quantitative LC-MS proteomics
- biocthis: automate package and project setup for Bioconductor packages
- scRNAseq: collection of public single-cell RNA-seq datasets
- TENxPBMCData: PBMC data from 10X genomics
- bioc-actions: GitHub Actions for developing and maintaining Bioconductor packages
- r-lib/actions: GitHub Actions for the R community